Predicting protein three-dimensional structure

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1997 • 71,835 citations

SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling

1997 • 10,943 citations

SCOP: A structural classification of proteins database for the investigation of sequences and structures

1995 • 6,372 citations

Profile hidden Markov models.

1998 • 5,297 citations

Protein Structure Comparison by Alignment of Distance Matrices

1993 • 3,989 citations

Prediction of Protein Secondary Structure at Better than 70% Accuracy

1993 • 2,958 citations

The relation between the divergence of sequence and structure in proteins.

1986 • 2,373 citations

Calculation of conformational ensembles from potentials of mena force

1990 • 1,091 citations

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

1998 • 560 citations

Ab initio protein structure prediction of CASP III targets using ROSETTA

1999 • 542 citations

Context-dependent secondary structure formation of a designed protein sequence

1996 • 395 citations

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

1998 • 358 citations

Helix packing in membrane proteins

1997 • 324 citations

Clustering of low-energy conformations near the native structures of small proteins

1998 • 296 citations

Processing and analysis of CASP3 protein structure predictions

1999 • 255 citations

The HSSP database of protein structure-sequence alignments and family profiles

1998 • 201 citations

Processing and analysis of CASP3 protein structure predictions

1999 • 179 citations

CAFASP‐1: Critical assessment of fully automated structure prediction methods

1999 • 144 citations

Ab initio folding of proteins using restraints derived from evolutionary information

1999 • 142 citations

A critical assessment of comparative molecular modeling of tertiary structures of proteins*

1995 • 140 citations

Biocomputing '97 - Proceedings of the Pacific Symposium

1996 • 135 citations

Analysis and assessment of ab initio three‐dimensional prediction, secondary structure, and contacts prediction

1999 • 129 citations

Comparison of systematic search and database methods for constructing segments of protein structure

1994 • 127 citations

Comparison of database potentials and molecular mechanics force fields

1997 • 125 citations

Progress in protein structure prediction: Assessment of CASP3

1999 • 121 citations

CAFASP-1: Critical assessment of fully automated structure prediction methods

1999 • 105 citations

Progress of 1D protein structure prediction at last

1995 • 97 citations

Successful recognition of protein folds using threading methods biased by sequence similarity and predicted secondary structure

1999 • 95 citations

Protein secondary structure prediction

1995 • 89 citations

Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction

1999 • 81 citations

Structure classification-based assessment of CASP3 predictions for the fold recognition targets

1999 • 80 citations

Assessment of comparative modeling in CASP2

1997 • 79 citations

Evaluation of current techniques for Ab initio protein structure prediction

1995 • 75 citations

Assessment of comparative modeling in CASP2

1997 • 73 citations

Comparative modeling of CASP3 targets using PSI‐BLAST and SCWRL

1999 • 64 citations

The current state of the art in protein structure prediction

1996 • 60 citations

CASP2: Report on ab initio predictions

1997 • 59 citations

Identification of homologous core structures

1999 • 59 citations

Threading with explicit models for evolutionary conservation of structure and sequence

1999 • 57 citations

Ab initio protein structure prediction using a combined hierarchical approach

1999 • 56 citations

Evaluation of the CASP2 docking section

1997 • 54 citations

Histone-like transcription factors in eukaryotes

1997 • 54 citations

CASP3 comparative modeling evaluation

1999 • 52 citations

Predicting structures for genome proteins

1999 • 51 citations

Determinants of side chain conformational preferences in protein structures

1998 • 49 citations

Comparative modeling of CASP3 targets using PSI-BLAST and SCWRL

1999 • 47 citations

Some measures of comparative performance in the three CASPs

1999 • 47 citations

RMS/Coverage graphs: A qualitative method for comparing three-dimensional protein structure predictions

1999 • 47 citations

Sustained performance of knowledge-based potentials in fold recognition

1999 • 43 citations

Fold recognition using sequence and secondary structure information

1999 • 43 citations

Automated large scale evaluation of protein structure predictions

1999 • 34 citations

How similar must a template protein be for homology modeling by side-chain packing methods?

1996 • 32 citations

Criteria for evaluating protein structures derived from comparative modeling

1997 • 19 citations

A measure of progress in fold recognition?

1999 • 19 citations

An attempt to analyse progress in fold recognition from CASP1 to CASP3

1999 • 16 citations

Modeling three-dimensional protein structures for amino acid sequences of the CASP3 experiment using sequence-derived predictions

1999 • 14 citations

Structure prediction: The state of the art

1999 • 12 citations