Progress in protein structure prediction: Assessment of CASP3

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1997 • 71,835 citations

Prediction of Protein Secondary Structure at Better than 70% Accuracy

1993 • 2,958 citations

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions

1997 • 1,403 citations

A new approach to protein fold recognition

1992 • 1,239 citations

Hidden Markov models for detecting remote protein homologies.

1998 • 1,122 citations

SCOP: a Structural Classification of Proteins database

1997 • 945 citations

Bayesian statistical analysis of protein side‐chain rotamer preferences

1997 • 792 citations

Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods

1998 • 560 citations

Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

1998 • 532 citations

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

1999 • 433 citations

Large-scale protein structure modeling of the Saccharomyces cerevisiae genome

1998 • 358 citations

Protein fold recognition using sequence‐derived predictions

1996 • 299 citations

New optimization method for conformational energy calculations on polypeptides: Conformational space annealing

1997 • 297 citations

Detection of native‐like models for amino acid sequences of unknown three‐dimensional structure in a data base of known protein conformations

1992 • 239 citations

Knowledge-Based Protein Modeling

1994 • 238 citations

Supersites within superfolds. Binding site similarity in the absence of homology 1 1Edited by J. Thornton

1998 • 206 citations

Protein folds and families: sequence and structure alignments

1999 • 201 citations

MMDB: Entrez's 3D-structure database

2002 • 197 citations

A united-residue force field for off-lattice protein-structure simulations. II. Parameterization of short-range interactions and determination of weights of energy terms by Z-score optimization

1997 • 185 citations

SCOP: a Structural Classification of Proteins database

1999 • 183 citations

The CATH Database provides insights into protein structure/function relationships

1999 • 179 citations

Structural assignments to the Mycoplasma genitalium proteins show extensive gene duplications and domain rearrangements

1998 • 170 citations

A brighter future for protein structure prediction.

1999 • 168 citations

Optimum superimposition of protein structures: ambiguities and implications

1996 • 137 citations

Protein Fold Recognition by Mapping Predicted Secondary Structures

1996 • 129 citations

Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium

1997 • 126 citations

Patterns of protein-fold usage in eight microbial genomes: A comprehensive structural census

1998 • 120 citations

Homology-based fold predictions for Mycoplasma genitalium proteins 1 1Edited by G. Von Heijne

1998 • 118 citations

Fold and function predictions for Mycoplasma genitalium proteins

1998 • 104 citations

Functional analysis of the Escherichia coli genome using the sequence-to-structure-to-function paradigm: identification of proteins exhibiting the Glutaredoxin/Thioredoxin disulfide oxidoreductase activity 1 1Edited by F. E. Cohen

1998 • 101 citations

Fold assembly of small proteins using Monte Carlo simulations driven by restraints derived from multiple sequence alignments

1998 • 94 citations

Evaluation of threading specificity and accuracy

1996 • 73 citations

Protein structural similarities predicted by a sequence‐structure compatibility method

1994 • 52 citations

MMDB: Entrez's 3D structure database

1999 • 35 citations

Model building by comparison: A combination of expert knowledge and computer automation

1997 • 17 citations

Analysis of the predicted structures of domain 1 of protein g3 (T0030) and NK-lysin (T0042)

1997 • 5 citations