Analysis and assessment of ab initio three-dimensional prediction, secondary structure, and contacts prediction

Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features

1983 • 14,802 citations

Protein Structure Comparison by Alignment of Distance Matrices

1993 • 3,989 citations

RASMOL: biomolecular graphics for all

1995 • 2,601 citations

CATH – a hierarchic classification of protein domain structures

1997 • 2,558 citations

Knowledge‐based protein secondary structure assignment

1995 • 2,460 citations

A new approach to protein fold recognition

1992 • 1,239 citations

JPred: a consensus secondary structure prediction server.

1998 • 1,017 citations

Evaluation and improvement of multiple sequence methods for protein secondary structure prediction

1999 • 688 citations

Protein structure alignment

1989 • 683 citations

Iterated profile searches with PSI-BLAST—a tool for discovery in protein databases

1998 • 682 citations

PHD-an automatic mail server for protein secondary structure prediction

1994 • 561 citations

Correlated mutations contain information about protein-protein interaction 1 1Edited by A. R. Fersht

1997 • 520 citations

An all-atom distance-dependent conditional probability discriminatory function for protein structure prediction 1 1Edited by F. Cohen

1998 • 450 citations

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

1999 • 433 citations

A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment

1999 • 376 citations

Prediction of local structure in proteins using a library of sequence-structure motifs

1998 • 346 citations

Identification of native protein folds amongst a large number of incorrect models

1990 • 305 citations

Crystal Structure of a Human Alkylbase-DNA Repair Enzyme Complexed to DNA

1998 • 284 citations

How to Derive a Protein Folding Potential? A New Approach to an Old Problem

1996 • 282 citations

LINUS: A hierarchic procedure to predict the fold of a protein

1995 • 270 citations

Solution structure of cyanovirin-N, a potent HIV-inactivating protein

1998 • 263 citations

What is the probability of a chance prediction of a protein structure with an rmsd of 6 å?

1998 • 215 citations

Improving contact predictions by the combination of correlated mutations and other sources of sequence information

1997 • 211 citations

Processing and analysis of CASP3 protein structure predictions

1999 • 179 citations

A neural network based predictor of residue contacts in proteins

1999 • 168 citations

Protein distance constraints predicted by neural networks and probability density functions

1997 • 160 citations

Predicting protein structure using hidden Markov models

1997 • 156 citations

Ab initio folding of proteins using restraints derived from evolutionary information

1999 • 142 citations

Fast structure alignment for protein databank searching

1992 • 140 citations

Structure of the Ets-1 pointed domain and mitogen-activated protein kinase phosphorylation site

1998 • 139 citations

Alpha plus beta folds revisited: some favoured motifs

1993 • 136 citations

New methods for accurate prediction of protein secondary structure

1999 • 125 citations

Prediction of the Folding Pathways and Structure of the GCN4 Leucine Zipper

1994 • 113 citations

Assembly of protein structure from sparse experimental data: An efficient Monte Carlo model

1998 • 109 citations

Fold assembly of small proteins using Monte Carlo simulations driven by restraints derived from multiple sequence alignments

1998 • 94 citations

Fold prediction by a hierarchy of sequence, threading, and modeling methods

1998 • 93 citations

Calculation of protein conformation by global optimization of a potential energy function

1999 • 89 citations

An Efficient Computational Method for Globally Optimal Threading1

1998 • 83 citations

Crystal structure of Escherichia coli HdeA

1998 • 80 citations

Structure classification-based assessment of CASP3 predictions for the fold recognition targets

1999 • 80 citations

CASP2: Report on ab initio predictions

1997 • 59 citations

Ab initio protein structure prediction using a combined hierarchical approach

1999 • 56 citations

RMS/Coverage graphs: A qualitative method for comparing three-dimensional protein structure predictions

1999 • 47 citations

Thermodynamic model of secondary structure for α-helical peptides and proteins

1997 • 29 citations

Improved ab Initio predictions with a simplified, flexible geometry model

1999 • 29 citations

Distance geometry generates native‐like folds for small helical proteins using the consensus distances of predicted protein structures

1998 • 28 citations

Prediction of protein structure using a knowledge-based off-lattice united-residue force field and global optimization methods

1999 • 26 citations

Protein fold recognition without Boltzmann statistics or explicit physical basis

1998 • 26 citations

Prediction of protein structure: The problem of fold multiplicity

1999 • 23 citations

Numerical criteria for the evaluation of ab initio predictions of protein structure

1997 • 18 citations

Search for the most stable folds of protein chains: II. Computation of stable architectures of β-proteins using a self-consistent molecular field theory

1996 • 17 citations

An attempt to analyse progress in fold recognition from CASP1 to CASP3

1999 • 16 citations