LGL: Creating a Map of Protein Function with an Algorithm for Visualizing Very Large Biological Networks

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1997 • 71,835 citations

KEGG: Kyoto Encyclopedia of Genes and Genomes

1999 • 30,001 citations

KEGG: Kyoto Encyclopedia of Genes and Genomes

2000 • 26,574 citations

Initial sequencing and analysis of the human genome

2001 • 23,520 citations

The Pfam protein families database.

2002 • 14,298 citations

The Sequence of the Human Genome

2001 • 13,500 citations

Evolution by Gene Duplication

1970 • 6,000 citations

Evolution by gene duplication

1970 • 5,849 citations

On the shortest spanning subtree of a graph and the traveling salesman problem

1956 • 4,806 citations

Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry

2002 • 3,624 citations

An efficient algorithm for large-scale detection of protein families

2002 • 3,548 citations

A Genomic Perspective on Protein Families

1997 • 3,531 citations

SMART, a simple modular architecture research tool: Identification of signaling domains

1998 • 3,523 citations

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999

1999 • 3,156 citations

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

2000 • 2,834 citations

STRING: a database of predicted functional associations between proteins

2003 • 2,327 citations

The Database of Interacting Proteins: 2004 update

2003 • 2,257 citations

The COG database: new developments in phylogenetic classification of proteins from complete genomes

2001 • 1,841 citations

Comparative Genomics of the Eukaryotes

2000 • 1,688 citations

Detecting Protein Function and Protein-Protein Interactions from Genome Sequences

1999 • 1,661 citations

Pajek - Program for Large Network Analysis

1999 • 1,402 citations

Discovering regulatory and signalling circuits in molecular interaction networks

2002 • 1,199 citations

DIP: the Database of Interacting Proteins

2000 • 1,114 citations

Protein interaction maps for complete genomes based on gene fusion events

1999 • 1,090 citations

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

2001 • 1,049 citations

Comparison of the Complete Protein Sets of Worm and Yeast: Orthology and Divergence

1998 • 447 citations

CLICK: a clustering algorithm with applications to gene expression analysis.

2000 • 401 citations

Three cdg Operons Control Cellular Turnover of Cyclic Di-GMP in Acetobacter xylinum : Genetic Organization and Occurrence of Conserved Domains in Isoenzymes

1998 • 363 citations

Finding families for genomic ORFans

1999 • 234 citations

Identification of a novel response regulator required for the swarmer-to-stalked-cell transition in Caulobacter crescentus

1995 • 204 citations

GeneRAGE: a robust algorithm for sequence clustering and domain detection

2000 • 195 citations

Mapping and visualizing the internet

2000 • 185 citations

Genome evolution

2000 • 184 citations

DIP: The Database of Interacting Proteins: 2001 update

2001 • 178 citations

Genes linked by fusion events are generally of the same functional category: A systematic analysis of 30 microbial genomes

2001 • 166 citations

BioLayout—an automatic graph layout algorithm for similarity visualization

2001 • 156 citations

Pathway analysis in metabolic databases via differential metabolic display (DMD)

2000 • 142 citations

ProtoMap: Automatic classification of protein sequences, a hierarchy of protein families, and local maps of the protein space

1999 • 112 citations

PathFinder: reconstruction and dynamic visualization of metabolic pathways

2002 • 69 citations

Clustering of proximal sequence space for the identification of protein families

2002 • 61 citations

Global self-organization of all known protein sequences reveals inherent biological signatures 1 1Edited by F. E. Cohen

1997 • 59 citations

BioMiner—modeling, analyzing, and visualizing biochemical pathways and networks

2002 • 57 citations

A fast layout algorithm for protein interaction networks

2003 • 38 citations

A map of the protein space--an automatic hierarchical classification of all protein sequences.

1998 • 29 citations

Visualization and analysis of protein interactions

2003 • 28 citations

Towards a complete map of the protein space based on a unified sequence and structure analysis of all known proteins.

2000 • 25 citations

Exploring the nonlinear geometry of protein homology

2003 • 17 citations

Deleted Work

1955 • 0 citations