TOUCHSTONE: A unified approach to protein structure prediction

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1997 • 71,835 citations

The PSIPRED protein structure prediction server

2000 • 3,578 citations

[5] Rapid and sensitive sequence comparison with FASTP and FASTA

1990 • 1,983 citations

Replica Monte Carlo Simulation of Spin-Glasses

1986 • 1,945 citations

GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences

1999 • 901 citations

Prediction of local structure in proteins using a library of sequence-structure motifs

1998 • 346 citations

Pcons: A neural‐network–based consensus predictor that improves fold recognition

2001 • 319 citations

A distance‐dependent atomic knowledge‐based potential for improved protein structure selection

2001 • 308 citations

TOUCHSTONE II: A New Approach to Ab Initio Protein Structure Prediction

2003 • 275 citations

Recognition of analogous and homologous protein folds: analysis of sequence and structure conservation 1 1Edited by F. E. Cohen

1997 • 197 citations

PROTEIN FOLDING: The Endgame

1997 • 191 citations

A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence

1997 • 163 citations

Processing and evaluation of predictions in CASP4

2001 • 155 citations

Bridging the Protein Sequence-Structure Gap by Structure Predictions

1996 • 152 citations

TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints

2001 • 147 citations

Ab initio folding of proteins using restraints derived from evolutionary information

1999 • 142 citations

Local energy landscape flattening: Parallel hyperbolic Monte Carlo sampling of protein folding

2002 • 141 citations

Defrosting the frozen approximation: PROSPECTOR? A new approach to threading

2001 • 138 citations

Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination.

1992 • 137 citations

A search for the most stable folds of protein chains

1991 • 135 citations

Assessing the performance of fold recognition methods by means of a comprehensive benchmark.

1996 • 131 citations

Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all‐atom force field and the surface generalized born solvent model

2002 • 125 citations

Progress in protein structure prediction: Assessment of CASP3

1999 • 121 citations

Generalized comparative modeling (GENECOMP): A combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement

2001 • 88 citations

Universal similarity measure for comparing protein structures

2001 • 76 citations

Ab initio protein structure prediction via a combination of threading, lattice folding, clustering, and structure refinement

2001 • 71 citations

Modeling three-dimensional protein structures for amino acid sequences of the CASP3 experiment using sequence-derived predictions

1999 • 14 citations