TOUCHSTONE: An ab initio protein structure prediction method that uses threading-based tertiary restraints

SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling

1997 • 10,943 citations

Protein secondary structure prediction based on position-specific scoring matrices 1 1Edited by G. Von Heijne

1999 • 5,382 citations

CATH – a hierarchic classification of protein domain structures

1997 • 2,558 citations

Replica Monte Carlo Simulation of Spin-Glasses

1986 • 1,945 citations

Improved prediction of protein secondary structure by use of sequence profiles and neural networks.

1993 • 525 citations

Energy Functions that Discriminate X-ray and Near-native Folds from Well-constructed Decoys

1996 • 424 citations

A distance‐dependent atomic knowledge‐based potential for improved protein structure selection

2001 • 308 citations

Evaluation of comparative protein structure modeling by MODELLER-3

1997 • 254 citations

Novel methods of sampling phase space in the simulation of biological systems

1997 • 219 citations

Method for prediction of protein function from sequence using the sequence-to-structure-to-function paradigm with application to Glutaredoxins/Thioredoxins and T 1 Ribonucleases 1 1Edited by F. Cohen

1998 • 208 citations

Prospects for ab initio protein structural genomics

2001 • 196 citations

Recent improvements in prediction of protein structure by global optimization of a potential energy function

2001 • 163 citations

Global Fold Determination from a Small Number of Distance Restraints

1995 • 139 citations

Defrosting the frozen approximation: PROSPECTOR? A new approach to threading

2001 • 138 citations

Combination of threading potentials and sequence profiles improves fold recognition 1 1Edited by B. Honig

2000 • 116 citations

Derivation of protein-specific pair potentials based on weak sequence fragment similarity

2000 • 114 citations

Assembly of protein structure from sparse experimental data: An efficient Monte Carlo model

1998 • 109 citations

Accurate reconstruction of all-atom protein representations from side-chain-based low-resolution models

2000 • 94 citations

Fold assembly of small proteins using Monte Carlo simulations driven by restraints derived from multiple sequence alignments

1998 • 94 citations

Generalized comparative modeling (GENECOMP): A combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement

2001 • 88 citations

Ab Initio fold prediction of small helical proteins using distance geometry and knowledge-based scoring functions 1 1Edited by F. Cohen

1999 • 88 citations

Comparison of three Monte Carlo conformational search strategies for a proteinlike homopolymer model: Folding thermodynamics and identification of low-energy structures

2000 • 73 citations

Finding the needle in a haystack: educing native folds from ambiguousab initio protein structure predictions

2001 • 70 citations

An Efficient Monte Carlo Model of Protein Chains. Modeling the Short-Range Correlations between Side Group Centers of Mass

1998 • 39 citations

Docking of small ligands to low‐resolution and theoretically predicted receptor structures

2001 • 30 citations

BioMolQuest: integrated database-based retrieval of protein structural and functional information

2001 • 24 citations