[22] Using CLUSTAL for multiple sequence alignments

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1994 • 63,397 citations

The neighbor-joining method: a new method for reconstructing phylogenetic trees.

1987 • 59,130 citations

CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP

1985 • 39,646 citations

Confidence Limits on Phylogenies: An Approach Using the Bootstrap

1985 • 18,213 citations

PHYLIP-Phylogeny inference package (Version 3.2)

1989 • 17,674 citations

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1970 • 11,049 citations

The Neutral Theory of Molecular Evolution

1979 • 7,965 citations

Multiple sequence alignment with hierarchical clustering

1988 • 5,250 citations

Atlas of protein sequence and structure

1965 • 4,462 citations

CLUSTAL: a package for performing multiple sequence alignment on a microcomputer

1988 • 3,446 citations

Hidden Markov Models in Computational Biology

1994 • 1,954 citations

Progressive sequence alignment as a prerequisitetto correct phylogenetic trees

1987 • 1,899 citations

Detecting Subtle Sequence Signals: a Gibbs Sampling Strategy for Multiple Alignment

1993 • 1,835 citations

Minimal Mutation Trees of Sequences

1975 • 580 citations

Two novel protein-tyrosine kinases, each with a second phosphotransferase-related catalytic domain, define a new class of protein kinase.

1991 • 499 citations

A strategy for the rapid multiple alignment of protein sequences

1987 • 482 citations

A Noncatalytic Domain Conserved among Cytoplasmic Protein-Tyrosine Kinases Modifies the Kinase Function and Transforming Activity of Fujinami Sarcoma Virus P130^gag-fps

1986 • 478 citations

Position-based sequence weights

1994 • 422 citations

Of urfs and orfs : a primer on how to analyze devised amino acid sequences

1986 • 370 citations

A noncatalytic domain conserved among cytoplasmic protein-tyrosine kinases modifies the kinase function and transforming activity of Fujinami sarcoma virus P130gag-fps.

1986 • 317 citations

Analysis of insertions/deletions in protein structures

1992 • 241 citations

A flexible method to align large numbers of biological sequences

1988 • 222 citations

A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given.

1989 • 178 citations

A multiple sequence alignment program

1986 • 158 citations

Multiple sequence alignment

1986 • 128 citations

Improving the sensitivity of the sequence profile method

1994 • 118 citations

Evaluation and improvements in the automatic alignment of protein sequences

1987 • 114 citations

A method for the simultaneous alignment of three or more amino acid sequences

1986 • 64 citations

MULTAN: a program to align multiple DNA sequences

1986 • 51 citations

Parsimony or statistics?

1994 • 7 citations