An iterative structure-assisted approach to sequence alignment and comparative modeling

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1997 • 71,835 citations

PROCHECK: a program to check the stereochemical quality of protein structures

1993 • 23,689 citations

Comparative Protein Modelling by Satisfaction of Spatial Restraints

1993 • 12,640 citations

Assessment of protein models with three-dimensional profiles

1992 • 3,317 citations

Prediction of Protein Secondary Structure at Better than 70% Accuracy

1993 • 2,958 citations

Recognition of errors in three-dimensional structures of proteins

1993 • 2,084 citations

[22] Using CLUSTAL for multiple sequence alignments

1996 • 1,594 citations

Combining evolutionary information and neural networks to predict protein secondary structure

1994 • 1,471 citations

Protein superfamilles and domain superfolds

1994 • 779 citations

Knowledge-based prediction of protein structures and the design of novel molecules

1987 • 653 citations

Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool

1997 • 565 citations

Definition of general topological equivalence in protein structures

1990 • 506 citations

HOMSTRAD: A database of protein structure alignments for homologous families

1998 • 505 citations

Knowledge based modelling of homologous proteins, part I: three-dimensional frameworks derived from the simultaneous superposition of multiple structures

1987 • 394 citations

JOY: protein sequence-structure representation and analysis.

1998 • 390 citations

Incorporation of non-local interactions in protein secondary structure prediction from the amino acid sequence

1996 • 378 citations

Application of a Self-consistent Mean Field Theory to Predict Protein Side-chains Conformation and Estimate Their Conformational Entropy

1994 • 355 citations

Knowledge-Based Protein Modeling

1994 • 238 citations

Knowledge based modelling of homologous proteins, part II: rules for the conformations of substituted sidechains

1987 • 233 citations

Tertiary structural constraints on protein evolutionary diversity: templates, key residues and structure prediction

1990 • 215 citations

Alignment and Searching for Common Protein Folds Using a Data Bank of Structural Templates

1993 • 163 citations

From comparisons of protein sequences and structures to protein modelling and design

1990 • 148 citations

An evaluation of the performance of an automated procedure for comparative modelling of protein tertiary structure

1993 • 123 citations

Fragment Ranking in Modelling of Protein Structure

1993 • 110 citations

Conformational analysis and clustering of short and medium size loops connecting regular secondary structures: A database for modeling and prediction

1996 • 105 citations

Predicting the conformational class of short and medium size loops connecting regular secondary structures: application to comparative modelling

1997 • 81 citations

A variable gap penalty function and feature weights for protein 3-D structure comparisons

1992 • 80 citations

CAMPASS: a database of structurally aligned protein superfamilies

1998 • 70 citations

Use of Amino Acid Environment-dependent Substitution Tables and Conformational Propensities in Structure Prediction from Aligned Sequences of Homologous Proteins I. Solvent Accessibility Classes

1994 • 59 citations

Improvement of side-chain modeling in proteins with the self-consistent mean field theory method based on an analysis of the factors influencing prediction

1999 • 47 citations

The Use of Amino Acid Patterns of Classified Helices and Strands in Secondary Structure Prediction

1996 • 43 citations

Analysis of interactive packing of secondary structural elements in α/β units in proteins

1999 • 20 citations