Comparative Genomics

The Human Genome Browser at UCSC

2002 • 9,920 citations

Initial sequencing and comparative analysis of the mouse genome

2002 • 6,971 citations

The Genome Sequence of the Malaria Mosquito Anopheles gambiae

2002 • 1,980 citations

A Test of Neutral Molecular Evolution Based on Nucleotide Data

1987 • 1,789 citations

Sequencing and comparison of yeast species to identify genes and regulatory elements

2003 • 1,785 citations

A vision for the future of genomics research

2003 • 1,721 citations

Comparative Genomics of the Eukaryotes

2000 • 1,688 citations

Nested Retrotransposons in the Intergenic Regions of the Maize Genome

1996 • 1,392 citations

Recent Segmental Duplications in the Human Genome

2002 • 1,342 citations

The Genome Sequence of Caenorhabditis briggsae: A Platform for Comparative Genomics

2003 • 964 citations

VISTA : visualizing global DNA sequence alignments of arbitrary length

2000 • 957 citations

Finding Functional Features in Saccharomyces Genomes by Phylogenetic Footprinting

2003 • 828 citations

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

2000 • 793 citations

Comparative analyses of multi-species sequences from targeted genomic regions

2003 • 637 citations

Mutation rates differ among regions of the mammalian genome

1989 • 593 citations

Phylogenetic Shadowing of Primate Sequences to Find Functional Regions of the Human Genome

2003 • 526 citations

Noncoding RNA gene detection using comparative sequence analysis

2001 • 482 citations

Integrating genomic homology into gene structure prediction

2001 • 471 citations

Genomic strategies to identify mammalian regulatory sequences

2001 • 389 citations

Human and Mouse Gene Structure: Comparative Analysis and Application to Exon Prediction

2000 • 382 citations

Long Human–Mouse Sequence Alignments Reveal Novel Regulatory Elements: A Reason to Sequence the Mouse Genome

1997 • 325 citations

Covariation in Frequencies of Substitution, Deletion, Transposition, and Recombination During Eutherian Evolution

2003 • 293 citations

Surveying Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence Analysis

2001 • 246 citations

Ensembl 2002: accommodating comparative genomics

2003 • 246 citations

Strategies and Tools for Whole-Genome Alignments

2003 • 228 citations

Phylogenetic footprinting reveals a nuclear protein which binds to silencer sequences in the human gamma and epsilon globin genes.

1992 • 183 citations

SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model

2003 • 177 citations

Distinguishing Regulatory DNA From Neutral Sites

2003 • 141 citations

Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three Salmonella enterica serovars, Typhimurium, Typhi and Paratyphi

2000 • 125 citations

SGP-1: Prediction and Validation of Homologous Genes Based on Sequence Alignments

2001 • 108 citations

GALA, a Database for Genomic Sequence Alignments and Annotations

2003 • 47 citations

Phylogenetic Footprinting Reveals a Nuclear Protein Which Binds to Silencer Sequences in the Human y and e Globin Genes

1992 • 46 citations

Evolutionary constraints and the neutral theory

1984 • 45 citations

Web-based visualization tools for bacterial genome alignments

2000 • 32 citations