Mapping DNA-protein interactions in large genomes by sequence tag analysis of genomic enrichment

Serial Analysis of Gene Expression

1995 • 3,659 citations

Transcriptional Regulatory Networks in Saccharomyces cerevisiae

2002 • 2,967 citations

The UCSC Genome Browser Database

2003 • 1,872 citations

Sequencing and comparison of yeast species to identify genes and regulatory elements

2003 • 1,785 citations

Genome-Wide Location and Function of DNA Binding Proteins

2000 • 1,720 citations

Control of Pancreas and Liver Gene Expression by HNF Transcription Factors

2004 • 1,293 citations

E2F integrates cell cycle progression with DNA repair, replication, and G₂/M checkpoints

2002 • 1,102 citations

Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF

2001 • 1,101 citations

Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs

2004 • 1,079 citations

Using the transcriptome to annotate the genome

2002 • 637 citations

Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme

1999 • 457 citations

Isolating human transcription factor targets by coupling chromatin immunoprecipitation and CpG island microarray analysis

2002 • 449 citations

Genome-Wide Analysis of the Biology of Stress Responses through Heat Shock Transcription Factor

2004 • 422 citations

Use of Chromatin Immunoprecipitation To Clone Novel E2F Target Promoters

2001 • 387 citations

Emerging roles for E2F: Beyond the G1/S transition and DNA replication

2003 • 334 citations

Distribution of NF-κB-binding sites across human chromosome 22

2003 • 302 citations

Gene expression analysis of plant host–pathogen interactions by SuperSAGE

2003 • 285 citations

Genomic analysis of gene expression relationships in transcriptional regulatory networks

2003 • 257 citations

Analysing uncharted transcriptomes with SAGE

2000 • 217 citations

DNA Microarrays: A Molecular Cloning Manual

2003 • 212 citations

NCBI Reference Sequence Project: update and current status

2003 • 175 citations

The RNA polymerase III transcriptome revealed by genome-wide localization and activity–occupancy relationships

2003 • 173 citations

An integrated gene annotation and transcriptional profiling approach towards the full gene content of the Drosophila genome

2003 • 130 citations

The Longhorn Array Database (LAD): An Open-Source, MIAME compliant implementation of the Stanford Microarray Database (SMD)

2003 • 102 citations

DNA Microarrays: A Molecular Cloning Manual

2003 • 88 citations

Characterizing the physical genome

2002 • 69 citations

Global Role of TATA Box-Binding Protein Recruitment to Promoters in Mediating Gene Expression Profiles

2004 • 65 citations