Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model

Mapping and quantifying mammalian transcriptomes by RNA-Seq

2008 • 12,817 citations

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

2007 • 5,117 citations

The Transcriptional Landscape of the Mammalian Genome

2005 • 3,444 citations

Mechanisms of Alternative Pre-Messenger RNA Splicing

2003 • 2,547 citations

The Transcriptional Landscape of the Yeast Genome Defined by RNA Sequencing

2008 • 2,448 citations

The UCSC Genome Browser Database

2003 • 1,872 citations

Genome-Wide Survey of Human Alternative Pre-mRNA Splicing with Exon Junction Microarrays

2003 • 1,406 citations

A Global View of Gene Activity and Alternative Splicing by Deep Sequencing of the Human Transcriptome

2008 • 1,270 citations

Transcriptional Maps of 10 Human Chromosomes at 5-Nucleotide Resolution

2005 • 1,152 citations

Unbiased Mapping of Transcription Factor Binding Sites along Human Chromosomes 21 and 22 Points to Widespread Regulation of Noncoding RNAs

2004 • 1,079 citations

Stem cell transcriptome profiling via massive-scale mRNA sequencing

2008 • 1,026 citations

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

2008 • 956 citations

A high-resolution map of active promoters in the human genome

2005 • 922 citations

Large-Scale Transcriptional Activity in Chromosomes 21 and 22

2002 • 839 citations

Genome-wide transcription and the implications for genomic organization

2007 • 701 citations

The program of androgen-responsive genes in neoplastic prostate epithelium

2002 • 473 citations

Short read fragment assembly of bacterial genomes

2007 • 448 citations

Whole-genome sequencing and variant discovery in C. elegans

2008 • 413 citations

Genomewide Analysis of mRNA Processing in Yeast Using Splicing-Specific Microarrays

2002 • 406 citations

Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones

2004 • 331 citations

Revealing Global Regulatory Features of Mammalian Alternative Splicing Using a Quantitative Microarray Platform

2004 • 320 citations

Identification and analysis of alternative splicing events conserved in human and mouse

2005 • 299 citations

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

2006 • 200 citations

Transcriptional programs activated by exposure of human prostate cancer cells to androgen

2002 • 192 citations

Antisense artifacts in transcriptome microarray experiments are resolved by actinomycin D

2007 • 192 citations

Androgen-induced expression of endoplasmic reticulum (ER) stress response genes in prostate cancer cells

2002 • 143 citations

Identification and Validation of Novel Androgen-Regulated Genes in Prostate Cancer

2004 • 129 citations

Quantitative expression profile of androgen-regulated genes in prostate cancer cells and identification of prostate-specific genes

2001 • 112 citations

Transcriptional interference: an unexpected layer of complexity in gene regulation

2007 • 103 citations

Two-Dimensional Transcriptome Profiling: Identification of Messenger RNA Isoform Signatures in Prostate Cancer from Archived Paraffin-Embedded Cancer Specimens

2006 • 75 citations