Analysis of domain motions in large proteins

VMD: Visual molecular dynamics

1996 • 54,630 citations

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1995 • 12,826 citations

The protein data bank: A computer-based archival file for macromolecular structures

1977 • 8,627 citations

Algorithms for Clustering Data

1990 • 8,109 citations

Algorithms for clustering data

1989 • 6,448 citations

CATH – a hierarchic classification of protein domain structures

1997 • 2,558 citations

Systematic analysis of domain motions in proteins from conformational change: New results on citrate synthase and T4 lysozyme

1998 • 776 citations

Structural Mechanisms for Domain Movements in Proteins

1994 • 741 citations

Analysis of domain motions by approximate normal mode calculations

1998 • 711 citations

Crystallographic refinement and atomic models of two different forms of citrate synthase at 2·7 and 1·7 Å resolution

1982 • 495 citations

CITRATE SYNTHASE: Structure, Control, and Mechanism

1986 • 357 citations

Model-free methods of analyzing domain motions in proteins from simulation: A comparison of normal mode analysis and molecular dynamics simulation of lysozyme

1997 • 274 citations

Protein domain movements: detection of rigid domains and visualization of hinges in comparisons of atomic coordinates

1997 • 239 citations

Hinge‐bending motion in citrate synthase arising from normal mode calculations

1995 • 202 citations

Domain motions in bacteriophage T4 lysozyme: A comparison between molecular dynamics and crystallographic data

1998 • 181 citations

Structural basis of asymmetry in the human immunodeficiency virus type 1 reverse transcriptase heterodimer.

1994 • 180 citations

Tertiary Structure of Proteins. I. Representation and Computation of the Conformations

1972 • 134 citations

Aspartate Transcarbamylase from Escherichia Coli: Activity and Regulation

1994 • 133 citations

Superposition of Molecular Structures using Quaternions

1991 • 96 citations

Rigid domains in proteins: An algorithmic approach to their identification

1995 • 69 citations

Comparison of three different crystal forms shows HIV-1 reverse transcriptase displays an internal swivel motion

1994 • 61 citations

Analysis of the Low Frequency Normal Modes of the T-state of Aspartate Transcarbamylase

1996 • 52 citations

Domain motions in proteins

1991 • 48 citations

Domain motions in proteins

1992 • 31 citations

Unlike the Quaternary Structure Transition, the Tertiary Structure Change of the 240s Loop in Allosteric Aspartate Transcarbamylase Requires Active Site Saturation by Substrate for Completion

1995 • 14 citations

Automatic and accurate method for analysis of proteins that undergo hinge-mediated domain and loop movements

1993 • 13 citations

Representing protein and peptide structures with parallel-coordinates

1997 • 12 citations