Issues in the analysis of oligonucleotide tiling microarrays for transcript mapping

The ENCODE (ENCyclopedia Of DNA Elements) Project

2004 • 2,327 citations

Microarray data normalization and transformation

2002 • 1,956 citations

Identifying differentially expressed genes using false discovery rate controlling procedures

2003 • 1,741 citations

Global Identification of Human Transcribed Sequences with Genome Tiling Arrays

2004 • 1,020 citations

Empirical Analysis of Transcriptional Activity in the Arabidopsis Genome

2003 • 906 citations

Large-Scale Transcriptional Activity in Chromosomes 21 and 22

2002 • 839 citations

Novel RNAs Identified From an In-Depth Analysis of the Transcriptome of Human Chromosomes 21 and 22

2004 • 529 citations

Experimental annotation of the human genome using microarray technology

2001 • 446 citations

Applications of DNA tiling arrays for whole-genome analysis

2004 • 407 citations

Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments

2004 • 390 citations

Rapid analysis of the DNA-binding specificities of transcription factors with DNA microarrays

2004 • 368 citations

Gene Expression Analysis Using Oligonucleotide Arrays Produced by Maskless Photolithography

2002 • 356 citations

RNA expression analysis using a 30 base pair resolution Escherichia coli genome array

2000 • 354 citations

Fundamentals of cDNA microarray data analysis

2003 • 337 citations

A model of molecular interactions on short oligonucleotide microarrays

2003 • 325 citations

Distribution of NF-κB-binding sites across human chromosome 22

2003 • 302 citations

The transcriptional activity of human Chromosome 22

2003 • 293 citations

A Gene Expression Map for the Euchromatic Genome of Drosophila melanogaster

2004 • 291 citations

High-Throughput Variation Detection and Genotyping Using Microarrays

2001 • 277 citations

Transcriptome analysis of Escherichia coli using high-density oligonucleotide probe arrays

2002 • 191 citations

ChIP-chip: A genomic approach for identifying transcription factor binding sites

2002 • 176 citations

CREB Binds to Multiple Loci on Human Chromosome 22

2004 • 172 citations

Making sense of microarray data distributions

2002 • 164 citations

Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays

2005 • 150 citations

Non-linear normalization and background correction in one-channel cDNA microarray studies

2003 • 147 citations

Genomic microarrays in the spotlight

2003 • 145 citations

Untitled

2004 • 101 citations

Light-directed 5'->3' synthesis of complex oligonucleotide microarrays

2003 • 95 citations

Background correction for cDNA microarray images using the TV+L1 model

2005 • 64 citations

Detecting false expression signals in high-density oligonucleotide arrays by an in silico approach

2004 • 64 citations

Genomic Approaches That Aid in the Identification of Transcription Factor Target Genes

2004 • 54 citations

Relationship between gene co-expression and probe localization on microarray slides

2003 • 38 citations

Identification and correction of spurious spatial correlations in microarray data

2003 • 28 citations