InterPro—an integrated documentation resource for protein families, domains and functional sites

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1997 • 71,835 citations

The Pfam protein families database.

2002 • 14,298 citations

Predicting transmembrane protein topology with a hidden markov model: application to complete genomes11Edited by F. Cohen

2001 • 11,901 citations

SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling

1997 • 10,943 citations

SMART, a simple modular architecture research tool: Identification of signaling domains

1998 • 3,523 citations

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999

1999 • 3,156 citations

InterProScan – an integration platform for the signature-recognition methods in InterPro

2001 • 2,837 citations

Comparative Genomics of the Eukaryotes

2000 • 1,688 citations

The PROSITE database, its status in 1999

1999 • 1,109 citations

The InterPro database, an integrated documentation resource for protein families, domains and functional sites

2001 • 1,049 citations

The PROSITE database, its status in 2002

2002 • 1,010 citations

A Neural Network Method for Identification of Prokaryotic and Eukaryotic Signal Peptides and Prediction of their Cleavage Sites

1997 • 686 citations

Recent improvements to the SMART domain-based sequence annotation resource

2002 • 685 citations

[9] Profile analysis

1990 • 486 citations

[8] SRS: Information retrieval system for molecular biology data banks

1996 • 472 citations

SCOP database in 2002: refinements accommodate structural genomics

2002 • 463 citations

TIGRFAMs: a protein family resource for the functional identification of proteins

2001 • 459 citations

ProDom and ProDom-CG: tools for protein domain analysis and whole genome comparisons

2000 • 372 citations

Increased coverage of protein families with the Blocks Database servers

2000 • 336 citations

Finding flexible patterns in unaligned protein sequences

1995 • 300 citations

PRINTS-S: the database formerly known as PRINTS

2000 • 223 citations

Highly specific protein sequence motifs for genome analysis

1998 • 195 citations

Efficient discovery of conserved patterns using a pattern graph

1997 • 150 citations

PRINTS and PRINTS-S shed light on protein ancestry

2002 • 119 citations

A novel method for automatic functional annotation of proteins.

1999 • 94 citations

Issues in predicting protein function from sequence

2001 • 83 citations

FingerPRINTScan: intelligent searching of the PRINTS motif database.

1999 • 79 citations

Blocks-based methods for detecting protein homology

2000 • 66 citations

Profiling the malaria genome: a gene survey of three species of malaria parasite with comparison to other apicomplexan species

2001 • 42 citations

iProClass: an integrated, comprehensive and annotated protein classification database

2001 • 40 citations

Browsing protein families via the ‘Rich Family Description’ format

1999 • 28 citations

Application of InterPro for the functional classification of the proteins of fish origin in SWISS-PROT and TrEMBL

2001 • 5 citations