<tt>edgeR</tt>: a Bioconductor package for differential expression analysis of digital gene expression data

Bioconductor: open software development for computational biology and bioinformatics.

2004 • 11,755 citations

Linear Models and Empirical Bayes Methods for Assessing Differential Expression in Microarray Experiments

2004 • 11,620 citations

RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays

2008 • 2,741 citations

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

2007 • 1,068 citations

Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing

2008 • 993 citations

Moderated statistical tests for assessing differences in tag abundance

2007 • 854 citations

Determination of tag density required for digital transcriptome analysis: Application to an androgen-sensitive prostate cancer model

2008 • 98 citations

The National Health and Medical Research Council

1971 • 84 citations

Computational methods for the comparative quantification of proteins in label-free LCn-MS experiments

2007 • 76 citations