Improved prediction of MHC class I and class II epitopes using a novel Gibbs sampling approach

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1997 • 71,835 citations

Equation of State Calculations by Fast Computing Machines

1953 • 34,935 citations

On Information and Sufficiency

1951 • 17,995 citations

Measuring the Accuracy of Diagnostic Systems

1988 • 9,129 citations

Amino acid substitution matrices from protein blocks.

1992 • 5,998 citations

Profile hidden Markov models.

1998 • 5,297 citations

Multiple sequence alignment with the Clustal series of programs

2003 • 4,849 citations

Sequence logos: a new way to display consensus sequences

1990 • 3,249 citations

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999

1999 • 3,156 citations

SYFPEITHI: database for MHC ligands and peptide motifs

1999 • 2,307 citations

Detecting Subtle Sequence Signals: a Gibbs Sampling Strategy for Multiple Alignment

1993 • 1,835 citations

Scheme for ranking potential HLA-A2 binding peptides based on independent binding of individual peptide side-chains.

1994 • 1,400 citations

Reliable prediction of T‐cell epitopes using neural networks with novel sequence representations

2003 • 1,064 citations

Selection of representative protein data sets

1992 • 823 citations

Generation of tissue-specific and promiscuous HLA ligand databases using DNA microarrays and virtual HLA class II matrices

1999 • 747 citations

Several Common HLA-DR Types Share Largely Overlapping Peptide Binding Repertoires

1998 • 647 citations

ERAAP customizes peptides for MHC class I molecules in the endoplasmic reticulum

2002 • 620 citations

Nine major HLA class I supertypes account for the vast preponderance of HLA-A and -B polymorphism

1999 • 619 citations

Amino acid substitution matrices

2000 • 459 citations

Position-based sequence weights

1994 • 422 citations

Gibbs motif sampling: Detection of bacterial outer membrane protein repeats

1995 • 400 citations

Sensitive quantitative predictions of peptide‐MHC binding by a ‘Query by Committee’ artificial neural network approach

2003 • 330 citations

Gibbs Recursive Sampler: finding transcription factor binding sites

2003 • 321 citations

Prediction of major histocompatibility complex binding regions of protein antigens by sequence pattern analysis.

1989 • 310 citations

Precise prediction of major histocompatibility complex class II-peptide interaction based on peptide side chain scanning.

1994 • 304 citations

Prediction of MHC class II-binding peptides using an evolutionary algorithm and artificial neural network.

1998 • 299 citations

MHCPEP, a database of MHC-binding peptides: update 1997

1998 • 213 citations

Antigen Presentation by MHC Class II Molecules: Invariant Chain Function, Protein Trafficking, and the Molecular Basis of Diverse Determinant Capture

1997 • 143 citations

MHCPEP, a database of MHC-binding peptides: update 1996

1997 • 132 citations

Capacity of intact proteins to bind to MHC class II molecules.

1989 • 129 citations

Establishment of a quantitative ELISA capable of determining peptide – MHC class I interaction

2002 • 98 citations

Prediction of promiscuous peptides that bind HLA class I molecules

2002 • 96 citations

Prediction of peptide affinity to HLA DRB1*0401.

1995 • 76 citations

HLA-DR binding analysis of peptides from islet antigens in IDDM.

1998 • 63 citations

Generating MHC class I ligands from viral gene products

1999 • 63 citations

Selecting Informative Data for Developing Peptide-MHC Binding Predictors Using a Query by Committee Approach

2003 • 13 citations