Rosetta predictions in CASP5: Successes, failures, and prospects for complete automation

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1997 • 71,835 citations

Identification of common molecular subsequences

1981 • 9,753 citations

Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and bayesian scoring functions

1997 • 1,403 citations

Native protein sequences are close to optimal for their structures

2000 • 811 citations

Bayesian statistical analysis of protein side‐chain rotamer preferences

1997 • 792 citations

Ab initio protein structure prediction of CASP III targets using ROSETTA

1999 • 542 citations

MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison

2002 • 490 citations

Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins

1999 • 433 citations

MaxSub: an automated measure for the assessment of protein structure prediction quality

2000 • 403 citations

Modeling structurally variable regions in homologous proteins with rosetta

2004 • 331 citations

Pcons: A neural‐network–based consensus predictor that improves fold recognition

2001 • 319 citations

Rosetta in CASP4: Progress in ab initio protein structure prediction

2001 • 310 citations

Generation and evaluation of dimension-reduced amino acid parameter representations by artificial neural networks

2001 • 260 citations

Coupled prediction of protein secondary and tertiary structure

2003 • 203 citations

An improved protein decoy set for testing energy functions for protein structure prediction

2003 • 160 citations

Processing and evaluation of predictions in CASP4

2001 • 155 citations

Contact order and ab initio protein structure prediction

2002 • 111 citations

Improving the performance of rosetta using multiple sequence alignment information and global measures of hydrophobic core formation

2001 • 88 citations

Distributions of beta sheets in proteins with application to structure prediction

2002 • 81 citations

Conserved residue clustering and protein structure prediction

2003 • 71 citations