Flux Coupling Analysis of Genome-Scale Metabolic Network Reconstructions

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The small world inside large metabolic networks

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A general definition of metabolic pathways useful for systematic organization and analysis of complex metabolic networks

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Metabolic network structure determines key aspects of functionality and regulation

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Theory for the Systemic Definition of Metabolic Pathways and their use in Interpreting Metabolic Function from a Pathway-Oriented Perspective

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Genome-Scale Metabolic Model of Helicobacter pylori 26695

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Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates

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Metabolic modeling of microbial strains in silico

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Thirteen Years of Building Constraint-Based In Silico Models of Escherichia coli

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Two approaches for metabolic pathway analysis?

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Combinatorial complexity of pathway analysis in metabolic networks.

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Assessment of the Metabolic Capabilities of Haemophilus influenzae Rd through a Genome-scale Pathway Analysis

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Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae

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FluxAnalyzer: exploring structure, pathways, and flux distributions in metabolic networks on interactive flux maps

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Constraints-based models: Regulation of Gene Expression Reduces the Steady-state Solution Space

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Minimal Reaction Sets for Escherichia coli Metabolism under Different Growth Requirements and Uptake Environments

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Selection analyses of insertional mutants using subgenic-resolution arrays

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The Genome-Scale Metabolic Extreme Pathway Structure in Haemophilus influenzae Shows Significant Network Redundancy

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