The role of pattern databases in sequence analysis

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1997 • 71,835 citations

Amino acid substitution matrices from protein blocks.

1992 • 5,998 citations

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999

1999 • 3,156 citations

The PROSITE database, its status in 1997

1997 • 1,783 citations

Profile analysis: detection of distantly related proteins.

1987 • 1,308 citations

MIPS: a database for genomes and protein sequences

2000 • 1,295 citations

The PROSITE database, its status in 1999

1999 • 1,109 citations

The SWISS-PROT protein sequence data bank and its supplement TrEMBL

1997 • 709 citations

Pfam 3.1: 1313 multiple alignments and profile HMMs match the majority of proteins

1999 • 511 citations

Hidden Markov models for sequence analysis: extension and analysis of the basic method

1996 • 448 citations

Empirical statistical estimates for sequence similarity searches

1998 • 341 citations

Pattern-induced multi-sequence alignment (PUMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling

1992 • 281 citations

Highly specific protein sequence motifs for genome analysis

1998 • 195 citations

Recent improvements of the ProDom database of protein domain families

1999 • 166 citations

PRINTS prepares for the new millennium

1999 • 129 citations

Improving the sensitivity of the sequence profile method

1994 • 118 citations

New features of the Blocks Database servers

1999 • 101 citations

The SBASE protein domain library, Release 4.0: a collection of annotated protein sequence segments

1996 • 100 citations

Protein annotation: detective work for function prediction

1998 • 74 citations

Introduction To Bioinformatics

2007 • 59 citations

DOMO: a new database of aligned protein domains

1998 • 48 citations

ProClass Protein Family Database

1999 • 35 citations

A map of the protein space--an automatic hierarchical classification of all protein sequences.

1998 • 29 citations

ADSP–a new package for computational sequence analysis

1992 • 26 citations

Protein classification and functional assignment

1998 • 16 citations

Database of protein sequence alignments: PIR-ALN

1999 • 13 citations