Onto-Tools: an ensemble of web-accessible, ontology-based tools for the functional design and interpretation of high-throughput gene expression experiments

Gene Ontology: tool for the unification of biology

2000 • 38,297 citations

KEGG: Kyoto Encyclopedia of Genes and Genomes

1999 • 30,001 citations

Cluster analysis and display of genome-wide expression patterns

1998 • 16,410 citations

The Sequence of the Human Genome

2001 • 13,500 citations

Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring

1999 • 11,586 citations

Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray

1995 • 9,575 citations

DAVID: Database for Annotation, Visualization, and Integrated Discovery

2003 • 8,668 citations

UniProt: the Universal Protein knowledgebase

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Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation

1999 • 2,990 citations

Expression monitoring by hybridization to high-density oligonucleotide arrays

1996 • 2,796 citations

DAVID: Database for Annotation, Visualization, and Integrated Discovery

2003 • 2,151 citations

Genomics, gene expression and DNA arrays

2000 • 2,039 citations

Identifying biological themes within lists of genes with EASE

2003 • 1,969 citations

The Sequence of the Human Genome

2015 • 1,654 citations

The KEGG databases at GenomeNet

2002 • 1,444 citations

GoMiner: a resource for biological interpretation of genomic and proteomic data

2003 • 1,211 citations

A DNA microarray system for analyzing complex DNA samples using two-color fluorescent probe hybridization.

1996 • 1,146 citations

Protein function in the post-genomic era

2000 • 721 citations

MetaCyc: a multiorganism database of metabolic pathways and enzymes

2005 • 625 citations

Global functional profiling of gene expression☆☆This work was funded in part by a Sun Microsystems grant awarded to S.D., NIH Grant HD36512 to S.A.K., a Wayne State University SOM Dean’s Post-Doctoral Fellowship, and an NICHD Contraception and Infertility Loan to G.C.O. Support from the WSU MCBI mode is gratefully appreciated.

2003 • 576 citations

Profiling Gene Expression Using Onto-Express

2002 • 464 citations

Microarray Biochip Technology

2000 • 402 citations

Onto-Tools, the toolkit of the modern biologist: Onto-Express, Onto-Compare, Onto-Design and Onto-Translate

2003 • 356 citations

Identifying biological themes within lists of genes with EASE

2003 • 278 citations

MetaCyc: a multiorganism database of metabolic pathways and enzymes

2003 • 265 citations

POWER_SAGE: comparing statistical tests for SAGE experiments

2000 • 170 citations

Exploring genome space

2000 • 119 citations

Shotgun DNA Sequencing

2003 • 59 citations

Assessing the Functional Bias of Commercial Microarrays Using the Onto-Compare Database

2003 • 16 citations