Consequences of Recombination on Traditional Phylogenetic Analysis

PHYLIP-Phylogeny inference package (Version 3.2)

1989 • 17,674 citations

Evolutionary trees from DNA sequences: A maximum likelihood approach

1981 • 14,097 citations

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism.

1989 • 13,216 citations

Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations.

1991 • 2,351 citations

The coalescent

1982 • 2,090 citations

STATISTICAL PROPERTIES OF THE NUMBER OF RECOMBINATION EVENTS IN THE HISTORY OF A SAMPLE OF DNA SEQUENCES

1985 • 1,603 citations

African Populations and the Evolution of Human Mitochondrial DNA

1991 • 1,320 citations

fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood

1994 • 1,146 citations

Maximum-Likelihood Estimation of Migration Rates and Effective Population Numbers in Two Populations Using a Coalescent Approach

1999 • 1,033 citations

Properties of a neutral allele model with intragenic recombination

1983 • 832 citations

An African HIV-1 sequence from 1959 and implications for the origin of the epidemic

1998 • 618 citations

Maximum Likelihood Estimation of Population Growth Rates Based on the Coalescent

1998 • 617 citations

Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling.

1995 • 471 citations

Ancestral Inference from Samples of DNA Sequences with Recombination

1996 • 417 citations

A Coalescent Estimator of the Population Recombination Rate

1997 • 416 citations

Phylogenetic evidence for recombination in dengue virus

1999 • 401 citations

Inference in Molecular Population Genetics

2000 • 316 citations

The coalescent and the genealogical process in geographically structured population

1990 • 275 citations

Simulating Probability Distributions in the Coalescent

1994 • 268 citations

Evidence of Recombination among Enteroviruses

1999 • 239 citations

Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates

1992 • 239 citations

Recombination as a Point Process along Sequences

1999 • 207 citations

Recombination and the power of statistical tests of neutrality

1999 • 199 citations

How clonal are human mitochondria?

1999 • 194 citations

The Coalescent Process With Selfing

1997 • 190 citations

Approximate methods for estimating the pattern of nucleotide substitution and the variation of substitution rates among sites

1996 • 186 citations

The molecular clock of HIV-1 unveiled through analysis of a known transmission history

1999 • 178 citations

The Myth of Eve: Molecular Biology and Human Origins: F. J. Ayala

1995 • 174 citations

The signature of balancing selection: Fungal mating compatibility gene evolution

1999 • 139 citations

The Coalescent With Gene Conversion

2000 • 136 citations

Molecular and phenotypic variation of the white locus region in Drosophila melanogaster.

1988 • 132 citations

Genealogical Structure Among Alleles Regulating Self-Incompatibility in Natural Populations of Flowering Plants

1997 • 118 citations

Neutral behavior of shared polymorphism

1997 • 117 citations

Molecular variation at the vermilion locus in geographically diverse populations of Drosophila melanogaster and D. simulans.

1995 • 79 citations

Extreme genetic differences among populations of Gazella granti, Grant's gazelle, in Kenya

1996 • 77 citations

Statistical Properties of the Sea

1967 • 68 citations

Different Models, Different Trees: The Geographic Origin of PTLV-I

1999 • 47 citations

Allelic Genealogies in Sporophytic Self-Incompatibility Systems in Plants

1998 • 42 citations

On the Number of Ancestors to a DNA Sequence

1997 • 40 citations

The Time to the Ancestor along Sequences with Recombination

1999 • 13 citations