Unsupervised pattern discovery in human chromatin structure through genomic segmentation

Error bounds for convolutional codes and an asymptotically optimum decoding algorithm

1967 • 6,657 citations

FIMO: scanning for occurrences of a given motif

2011 • 3,900 citations

Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

2005 • 3,888 citations

SYSTEMS OF FREQUENCY CURVES GENERATED BY METHODS OF TRANSLATION

1949 • 2,026 citations

The UCSC Genome Browser database: update 2011

2010 • 1,753 citations

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

2003 • 1,718 citations

A User's Guide to the Encyclopedia of DNA Elements (ENCODE)

2011 • 1,457 citations

TRANSFAC: an integrated system for gene expression regulation

2000 • 1,236 citations

Discovery and characterization of chromatin states for systematic annotation of the human genome

2010 • 1,037 citations

Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells

2010 • 925 citations

Comprehensive analysis of the chromatin landscape in Drosophila melanogaster

2010 • 853 citations

Ongoing and future developments at the Universal Protein Resource

2010 • 726 citations

GENCODE: producing a reference annotation for ENCODE

2006 • 616 citations

Ensembl 2011

2010 • 592 citations

Next generation software for functional trend analysis

2009 • 277 citations

Transmembrane Topology and Signal Peptide Prediction Using Dynamic Bayesian Networks

2008 • 262 citations

ENCODE whole-genome data in the UCSC genome browser (2011 update)

2010 • 178 citations

ChromaSig: A Probabilistic Approach to Finding Common Chromatin Signatures in the Human Genome

2008 • 151 citations

A fast Bayesian change point analysis for the segmentation of microarray data

2008 • 149 citations

Characterization of human epigenomes

2009 • 146 citations

Graphical model architectures for speech recognition

2005 • 120 citations

Unsupervised segmentation of continuous genomic data

2007 • 115 citations

CAGE (Cap Analysis of Gene Expression): A Protocol for the Detection of Promoter and Transcriptional Networks

2011 • 99 citations

Spatial Clustering of Multivariate Genomic and Epigenomic Information

2009 • 38 citations

Exploratory analysis of genomic segmentations with Segtools

2011 • 24 citations

The Genomedata format for storing large-scale functional genomics data

2010 • 21 citations