Tissue Microbiome Profiling Identifies an Enrichment of Specific Enteric Bacteria in Opisthorchis viverrini Associated Cholangiocarcinoma

Fast and accurate short read alignment with Burrows–Wheeler transform

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Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

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UniFrac: a New Phylogenetic Method for Comparing Microbial Communities

2005 • 7,481 citations

SILVA: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

2007 • 6,227 citations

A metagenome-wide association study of gut microbiota in type 2 diabetes

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An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

2011 • 4,780 citations

Interactions Between the Microbiota and the Immune System

2012 • 3,793 citations

Commensal Bifidobacterium promotes antitumor immunity and facilitates anti–PD-L1 efficacy

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The Human Oral Microbiome

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NGS QC Toolkit: A Toolkit for Quality Control of Next Generation Sequencing Data

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Human nutrition, the gut microbiome and the immune system

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The gut microbiota, bacterial metabolites and colorectal cancer

2014 • 2,313 citations

The Placenta Harbors a Unique Microbiome

2014 • 2,276 citations

Fusobacterium nucleatum Potentiates Intestinal Tumorigenesis and Modulates the Tumor-Immune Microenvironment

2013 • 2,151 citations

Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences

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Obesity-induced gut microbial metabolite promotes liver cancer through senescence secretome

2013 • 1,920 citations

Genomic analysis identifies association of Fusobacterium with colorectal carcinoma

2011 • 1,698 citations

Metagenomic microbial community profiling using unique clade-specific marker genes

2012 • 1,661 citations

The interaction between bacteria and bile

2004 • 1,614 citations

The microbiome and cancer

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The Dynamics of the Human Infant Gut Microbiome in Development and in Progression toward Type 1 Diabetes

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Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome

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Risk factors for cholangiocarcinoma

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Microbial Dysbiosis in Colorectal Cancer (CRC) Patients

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An opportunistic pathogen isolated from the gut of an obese human causes obesity in germfree mice

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Glycine Decarboxylase Activity Drives Non-Small Cell Lung Cancer Tumor-Initiating Cells and Tumorigenesis

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Tumor Microenvironment Complexity: Emerging Roles in Cancer Therapy

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Integrative Molecular Analysis of Intrahepatic Cholangiocarcinoma Reveals 2 Classes That Have Different Outcomes

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Distribution of Bifidobacterial Species in Human Intestinal Microflora Examined with 16S rRNA-Gene-Targeted Species-Specific Primers

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Exome sequencing of liver fluke–associated cholangiocarcinoma

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Exome sequencing identifies distinct mutational patterns in liver fluke–related and non-infection-related bile duct cancers

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EMIRGE: reconstruction of full-length ribosomal genes from microbial community short read sequencing data

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The Effects of Circumcision on the Penis Microbiome

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Gut microbiota dysbiosis and bacterial community assembly associated with cholesterol gallstones in large-scale study

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The role of bile acids in carcinogenesis

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The Opisthorchis viverrini genome provides insights into life in the bile duct

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The Characterization of Novel Tissue Microbiota Using an Optimized 16S Metagenomic Sequencing Pipeline

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Bile duct bacterial isolates in primary sclerosing cholangitis: a study of explanted livers

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Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome

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Bacterial and Parasitic Cholangitis

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Pseudomonas monteilii sp. nov., Isolated from Clinical Specimens

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Aerobic and anaerobic microbiology of biliary tract disease

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The genusDietzia: a new home for some known and emerging opportunist pathogens

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Species Identification and Profiling of Complex Microbial Communities Using Shotgun Illumina Sequencing of 16S rRNA Amplicon Sequences

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Microbiota studies in the bile duct strongly suggest a role for Helicobacter pylori in extrahepatic cholangiocarcinoma

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Helicobacter pylori in Thai patients with cholangiocarcinoma and its association with biliary inflammation and proliferation

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A patient presenting with cholangitis due to Stenotrophomonas maltophilia and Pseudomonas aeruginosa successfully treated with intrabiliary colistine

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In vitro interaction of Stenotrophomonas maltophilia with human monocyte-derived dendritic cells

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