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2009 • 54,537 citations

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2009 • 51,582 citations

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

2010 • 24,159 citations

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

2009 • 20,860 citations

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

2010 • 14,282 citations

Fast and accurate long-read alignment with Burrows–Wheeler transform

2010 • 10,709 citations

A map of human genome variation from population-scale sequencing

2010 • 7,765 citations

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2010 • 5,471 citations

SOAP2: an improved ultrafast tool for short read alignment

2009 • 3,544 citations

An integrated semiconductor device enabling non-optical genome sequencing

2011 • 2,094 citations

A survey of sequence alignment algorithms for next-generation sequencing

2010 • 874 citations

Cloud-scale RNA-sequencing differential expression analysis with Myrna

2010 • 323 citations

Accurate and comprehensive sequencing of personal genomes

2011 • 211 citations