RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

MrBayes 3: Bayesian phylogenetic inference under mixed models

2003 • 28,146 citations

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

2003 • 16,546 citations

Obesity alters gut microbial ecology

2005 • 5,818 citations

Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion

2006 • 3,068 citations

RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees

2004 • 1,450 citations

Unexpected Diversity and Complexity of the Guerrero Negro Hypersaline Microbial Mat

2006 • 461 citations

Phylogenetic models of rate heterogeneity: a high performance computing perspective

2006 • 304 citations

Phylogenetic models of rate heterogeneity: a high performance computing perspective

2006 • 279 citations

Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood

2005 • 208 citations

Phylogenetic diversity and ecology of environmental Archaea

2005 • 148 citations

Maximum likelihood of evolutionary trees: hardness and approximation

2005 • 95 citations

pIQPNNI: parallel reconstruction of large maximum likelihood phylogenies

2005 • 86 citations