Multiple-sequence functional annotation and the generalized hidden Markov phylogeny

Evolutionary trees from DNA sequences: A maximum likelihood approach

1981 • 14,097 citations

Prediction of complete gene structures in human genomic DNA

1997 • 4,041 citations

Learning in Graphical Models

1998 • 2,447 citations

Probabilistic Networks and Expert Systems

1999 • 1,804 citations

fastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood

1994 • 1,146 citations

A Hidden Markov Model approach to variation among sites in rate of evolution

1996 • 839 citations

Phylogenetic Shadowing of Primate Sequences to Find Functional Regions of the Human Genome

2003 • 526 citations

Integrating genomic homology into gene structure prediction

2001 • 471 citations

Statistical features of human exons and their flanking regions

1998 • 438 citations

A space-time process model for the evolution of DNA sequences.

1995 • 409 citations

A generalized hidden Markov model for the recognition of human genes in DNA.

1996 • 393 citations

Identification of protein coding regions in the human genome by quadratic discriminant analysis

1997 • 286 citations

Combining Phylogenetic and Hidden Markov Models in Biosequence Analysis

2004 • 257 citations

Computational prediction of eukaryotic protein-coding genes

2002 • 251 citations

Comparative Gene Prediction in Human and Mouse

2003 • 221 citations

SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model

2003 • 177 citations

Comparative ab initio prediction of gene structures using pair HMMs

2002 • 139 citations

Using Evolutionary Trees in Protein Secondary Structure Prediction and Other Comparative Sequence Analyses

1996 • 125 citations

Gene finding with a hidden Markov model of genome structure and evolution

2003 • 106 citations

Inference of functional regions in proteins by quantification of evolutionary constraints

2002 • 73 citations

MAVID multiple alignment server

2003 • 70 citations