d2_cluster: A Validated Method for Clustering EST and Full-Length cDNA Sequences
Data up to Jan 2025
Total Citations Per Year
Abstract
References (38)
Applied Multivariate Statistical Analysis.
1988 • 11,858 citations
Complementary DNA Sequencing: Expressed Sequence Tags and Human Genome Project
1991 • 2,286 citations
[5] Rapid and sensitive sequence comparison with FASTP and FASTA
1990 • 1,983 citations
Pfam: A comprehensive database of protein domain families based on seed alignments
1997 • 1,211 citations
A gene map of the human genome.
1996 • 986 citations
Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence.
1995 • 804 citations
An STS-Based Map of the Human Genome
1995 • 782 citations
Sequence identification of 2,375 human brain genes
1992 • 764 citations
A Gene Map of the Human Genome
1996 • 737 citations
Large scale cDNA sequencing for analysis of quantitative and qualitative aspects of gene expression
1992 • 528 citations
TIGR Assembler: A New Tool for Assembling Large Shotgun Sequencing Projects
1995 • 413 citations
ESTablishing a human transcript map
1995 • 391 citations
Modular arrangement of proteins as inferred from analysis of homology
1994 • 242 citations
BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results.
1995 • 229 citations
A Comprehensive Approach to Clustering of Expressed Human Gene Sequence: The Sequence Tag Alignment and Consensus Knowledge Base
1999 • 201 citations
GenBank
1994 • 174 citations
Discovery of three genes specifically expressed in human prostate by expressed sequence tag database analysis
1998 • 148 citations
Alternate Polyadenylation in Human mRNAs: A Large-Scale Analysis by EST Clustering
1998 • 129 citations
Use of 3' untranslated sequences of human cDNAs for rapid chromosome assignment and conversion to STSs: implications for an expression map of the genome
1991 • 117 citations
A Measure of DNA Sequence Dissimilarity Based on Mahalanobis Distance between Frequencies of Words
1997 • 116 citations
Alternative Gene Form Discovery and Candidate Gene Selection from Gene Indexing Projects
1998 • 105 citations
The Genexpress Index: a resource for gene discovery and the genic map of the human genome.
1995 • 90 citations
CLEANUP: a fast computer program for removing redundancies from nucleotide sequence databases
1996 • 90 citations
The Genexpress IMAGE Knowledge Base of the Human Brain Transcriptome: A Prototype Integrated Resource for Functional and Computational Genomics
1999 • 82 citations
A novel system for large-scale sequencing of cDNA by PCR amplification
1991 • 76 citations
Biological Evaluation of d2, an Algorithm for High-Performance Sequence Comparison
1994 • 71 citations
Automated protein sequence database classification. I. Integration of compositional similarity search, local similarity search, and multiple sequence alignment.
1998 • 70 citations
Automated protein sequence database classification. II. Delineation Of domain boundaries from sequence similarities.
1998 • 54 citations
[2] TDB: New databases for biological discovery
1996 • 53 citations
The Merck Gene Index browser: an extensible data integration system for gene finding, gene characterization and EST data mining.
1998 • 37 citations
Improved tools for DNA comparison and clustering
1995 • 34 citations
CRAWview: for viewing splicing variation, gene families, and polymorphism in clusters of ESTs and full-length sequences.
1999 • 31 citations
Identification of new genes by systematic analysis of cdnas and database construction
1993 • 28 citations
A new dynamic tool to perform assembly of Expressed Sequence Tags (ESTs)
1997 • 28 citations
An Expression Profile of Active Genes in Human Colonic Mucosa
1994 • 24 citations
Automated clustering and assembly of large EST collections.
1998 • 13 citations
Identification of new human receptor and transporter genes by high throughput cDNA (EST) sequencing.
1993 • 10 citations
A Novel Approach Towards a Comprehensive Consensus Representation of the Expressed Human Genome
1997 • 7 citations