Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation 1 1 Edited by B. Honig

The protein data bank: A computer-based archival file for macromolecular structures

1977 • 8,627 citations

Prediction of Protein Secondary Structure at Better than 70% Accuracy

1993 • 2,958 citations

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1991 • 2,629 citations

Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation

1985 • 1,570 citations

The Solubility of Amino Acids and Two Glycine Peptides in Aqueous Ethanol and Dioxane Solutions

1971 • 1,417 citations

Residue – Residue Potentials with a Favorable Contact Pair Term and an Unfavorable High Packing Density Term, for Simulation and Threading

1996 • 1,243 citations

A new approach to protein fold recognition

1992 • 1,239 citations

Hydrophobicity of Amino Acid Residues in Globular Proteins

1985 • 1,168 citations

A simplified representation of protein conformations for rapid simulation of protein folding

1976 • 1,099 citations

Calculation of conformational ensembles from potentials of mena force

1990 • 1,091 citations

Computer simulation of protein folding

1975 • 1,020 citations

Affinities of amino acid side chains for solvent water

1981 • 846 citations

Selection of representative protein data sets

1992 • 823 citations

Enlarged representative set of protein structures

1994 • 794 citations

Weakly Polar Interactions In Proteins

1988 • 724 citations

Aromatic rings act as hydrogen bond acceptors

1988 • 685 citations

Hydrophobicity scales and computational techniques for detecting amphipathic structures in proteins

1987 • 637 citations

Statistical Thermodynamics for Chemists and Biochemists

1992 • 472 citations

Statistical Potentials Extracted From Protein Structures: How Accurate Are They?

1996 • 428 citations

Energy Functions that Discriminate X-ray and Near-native Folds from Well-constructed Decoys

1996 • 424 citations

An empirical energy function for threading protein sequence through the folding motif

1993 • 410 citations

The Configuration of Random Polypeptide Chains. II. Theory

1965 • 407 citations

Contact potential that recognizes the correct folding of globular proteins

1992 • 347 citations

Identification of native protein folds amongst a large number of incorrect models

1990 • 305 citations

Amino/Aromatic Interactions in Proteins: Is the Evidence Stacked Against Hydrogen Bonding?

1994 • 294 citations

Structure-derived potentials and protein simulations

1996 • 288 citations

Planar Stacking Interactions of Arginine and Aromatic Side-Chains in Proteins

1994 • 283 citations

Conformations of folded proteins in restricted spaces

1990 • 231 citations

Reduced representation model of protein structure prediction: Statistical potential and genetic algorithms

1993 • 212 citations

Factors Influencing the Ability of Knowledge-based Potentials to Identify Native Sequence-Structure Matches

1994 • 211 citations

A computer model to dynamically simulate protein folding: Studies with crambin

1989 • 166 citations

Structure-derived hydrophobic potential

1992 • 163 citations

Are proteins ideal mixtures of amino acids? Analysis of energy parameter sets

1995 • 147 citations

Sequence-structure matching in globular proteins: application to supersecondary and tertiary structure determination.

1992 • 137 citations

A preference-based free-energy parameterization of enzyme-inhibitor binding. Applications to HIV-1-protease inhibitor design

1995 • 117 citations

Empirical Studies of Hydrophobicity. 1. Effect of Protein Size on the Hydrophobic Behavior of Amino Acids

1980 • 91 citations

A simplified amino acid potential for use in structure predictions of proteins

1994 • 79 citations

Discriminating compact nonnative structures from the native structure of globular proteins.

1995 • 76 citations

Computer Modeling of Protein Folding: Conformational and Energetic Analysis of Reduced and Detailed Protein Models

1995 • 75 citations

Coordination geometry of nonbonded residues in globular proteins

1996 • 69 citations

An improved pair potential to recognize native protein folds

1994 • 49 citations

Assembly of polypeptide and protein backbone conformations from low energy ensembles of short fragments: Development of strategies and construction of models for myoglobin, lysozyme, and thymosin β₄

1992 • 45 citations

Effects of compact volume and chain stiffness on the conformations of native proteins.

1992 • 43 citations

A new computational model for protein folding based on atomic solvation

1995 • 34 citations

Protein folds

1992 • 28 citations

Sidechain and backbone potential function for conformational analysis of proteins

1985 • 21 citations

Spatial assignment of amino acid residues in globular proteins: An approach from information theory

1980 • 19 citations

Protein structure prediction based on statistical potential

1992 • 14 citations