Vienna RNA secondary structure server

Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure

1999 • 3,775 citations

Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information

1981 • 3,596 citations

A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics

1998 • 2,705 citations

Fast folding and comparison of RNA secondary structures

1994 • 2,262 citations

The equilibrium partition function and base pair binding probabilities for RNA secondary structure

1990 • 1,321 citations

From sequences to shapes and back: a case study in RNA secondary structures

1994 • 842 citations

Secondary Structure Prediction for Aligned RNA Sequences

2002 • 639 citations

Complete suboptimal folding of RNA and the stability of secondary structures

1999 • 557 citations

RNA secondary structure prediction using stochastic context-free grammars and evolutionary history.

1999 • 348 citations

Finding the most significant common sequence and structure motifs in a set of RNA sequences

1997 • 215 citations

Automatic detection of conserved RNA structure elements in complete RNA virus genomes

1998 • 149 citations

RNAML: A standard syntax for exchanging RNA information

2002 • 105 citations

‘Well-determined’ regions in RNA secondary structure prediction: analysis of small subunit ribosomal RNA

1995 • 103 citations

Construct a tool for thermodynamic controlled prediction of conserved secondary structure

1999 • 96 citations

An improved algorithm for nucleic acid secondary structure display

1988 • 72 citations

RNA Secondary Structure Prediction Based on Free Energy and Phylogenetic Analysis

1999 • 72 citations

Complete suboptimal folding of RNA and the stability of secondary structures

1999 • 19 citations