Computational analysis of core promoters in the Drosophila genome

Basic local alignment search tool

1990 • 87,358 citations

Pattern Classification

2012 • 20,094 citations

DNA methylation patterns and epigenetic memory

2002 • 6,778 citations

Pattern Classification

2001 • 5,588 citations

The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999

1999 • 3,156 citations

The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

2000 • 2,834 citations

Detecting Subtle Sequence Signals: a Gibbs Sampling Strategy for Multiple Alignment

1993 • 1,835 citations

Identification of protein coding regions by database similarity search

1993 • 1,660 citations

The DNA sequence of human chromosome 21

2000 • 1,406 citations

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences.

1999 • 1,272 citations

The DNA sequence of human chromosome 22

1999 • 1,167 citations

Creating the Gene Ontology Resource: Design and Implementation

2001 • 941 citations

Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome

2001 • 869 citations

Creating the gene ontology resource: design and implementation.

2001 • 831 citations

Orchestrated response: a symphony of transcription factors for gene control

2000 • 763 citations

A Computer Program for Aligning a cDNA Sequence with a Genomic DNA Sequence

1998 • 745 citations

The value of prior knowledge in discovering motifs with MEME.

1995 • 673 citations

The RNA polymerase II core promoter: a key component in the regulation of gene expression

2002 • 622 citations

Computational identification of promoters and first exons in the human genome

2001 • 411 citations

Annotation of the Drosophila melanogastereuchromatic genome: a systematic review

2002 • 377 citations

A Gibbs Sampling Method to Detect Overrepresented Motifs in the Upstream Regions of Coexpressed Genes

2002 • 353 citations

The Downstream Promoter Element DPE Appears To Be as Widely Used as the TATA Box in Drosophila Core Promoters

2000 • 347 citations

Eukaryotic Promoter Recognition

1997 • 341 citations

Computational Detection and Location of Transcription Start Sites in Mammalian Genomic DNA

2002 • 293 citations

The Eukaryotic Promoter Database EPD

1998 • 284 citations

Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes

2000 • 283 citations

Construction and characterization of a full length-enriched and a 5′-end-enriched cDNA library

1997 • 258 citations

Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes

2001 • 256 citations

Core promoters: active contributors to combinatorial gene regulation: Figure 1.

2001 • 232 citations

TRF2 associates with DREF and directs promoter-selective gene expression in Drosophila

2002 • 208 citations

Genome Annotation Assessment in Drosophila melanogaster

2000 • 206 citations

Insertion site preferences of the P transposable element in Drosophila melanogaster

2000 • 205 citations

The Drosophila Gene Collection: Identification of Putative Full-Length cDNAs for 70% of D. melanogaster Genes

2002 • 197 citations

Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes

2001 • 186 citations

Full-length messenger RNA sequences greatly improve genome annotation

2002 • 177 citations

Co-operative DNA binding by GAGA transcription factor requires the conserved BTB/POZ domain and reorganizes promoter topology

1999 • 173 citations

Diverse transcriptional initiation revealed by fine, large‐scale mapping of mRNA start sites

2001 • 168 citations

The Eukaryotic Promoter Database (EPD)

2000 • 154 citations

Promoter prediction in the human genome

2001 • 125 citations

Joint modeling of DNA sequence and physical properties to improve eukaryotic promoter recognition

2001 • 124 citations

Promoter elements in Drosophila melanogaster revealed by sequence analysis.

1995 • 120 citations

Interpolated markov chains for eukaryotic promoter recognition.

1999 • 115 citations

Determinants of CpG Islands: Expression in Early Embryo and Isochore Structure

2001 • 103 citations

DNA structure in human RNA polymerase II promoters 1 1Edited by J. Karn

1998 • 92 citations

Gene Regulation: A Eukaryotic Perspective

1990 • 91 citations

Gene Regulation: A Eukaryotic Perspective

2002 • 63 citations

First Pass Annotation of Promoters on Human Chromosome 22

2001 • 55 citations

Comparative evaluation of 5′-end-sequence quality of clones in CAP trapper and other full-length-cDNA libraries

2001 • 41 citations

[Computer analysis and recognition of Drosophila melanogaster gene promoters].

2001 • 6 citations