Recent Developments in Linear-Space Alignment Methods: A Survey

Basic local alignment search tool

1990 • 87,358 citations

Methods in Enzymology , Vol

1966 • 26,261 citations

Basic Local Alignment Search Tool

1990 • 12,947 citations

Improved tools for biological sequence comparison.

1988 • 11,455 citations

A general method applicable to the search for similarities in the amino acid sequence of two proteins

1970 • 11,049 citations

Identification of common molecular subsequences

1981 • 9,753 citations

CLUSTAL V: improved software for multiple sequence alignment

1992 • 2,421 citations

[5] Rapid and sensitive sequence comparison with FASTP and FASTA

1990 • 1,983 citations

Progressive sequence alignment as a prerequisitetto correct phylogenetic trees

1987 • 1,899 citations

An improved algorithm for matching biological sequences

1982 • 1,728 citations

Rapid similarity searches of nucleic acid and protein data banks.

1983 • 1,577 citations

Optimal alignments in linear space

1988 • 1,229 citations

A linear space algorithm for computing maximal common subsequences

1975 • 1,107 citations

A time-efficient, linear-space local similarity algorithm

1991 • 984 citations

Some biological sequence metrics

1976 • 374 citations

Detailed analysis of the site 3 region of the human beta-globin dominant control region.

1990 • 320 citations

Tandem AP-1-binding sites within the human beta-globin dominant control region function as an inducible enhancer in erythroid cells.

1990 • 301 citations

A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons

1987 • 293 citations

An erythroid-specific, developmental-stage-independent enhancer far upstream of the human "beta-like globin" genes.

1989 • 280 citations

Optimal sequence alignments

1983 • 226 citations

Approximate matching of regular expressions

1989 • 187 citations

A space-efficient algorithm for local similarities

1990 • 182 citations

Sparse dynamic programming I

1992 • 164 citations

Sequence comparison with concave weighting functions

1988 • 155 citations

Aligning two sequences within a specified diagonal band

1992 • 153 citations

Gap costs for multiple sequence alignment

1989 • 135 citations

A survey of multiple sequence comparison methods

1992 • 123 citations

Human beta-globin locus control region: analysis of the 5' DNase I hypersensitive site HS 2 in transgenic mice.

1991 • 121 citations

Efficient sequence alignment algorithms

1984 • 112 citations

Approximate matching of regular expressions

1989 • 105 citations

In vivo protein-DNA interactions at the beta-globin gene locus.

1991 • 97 citations

The Context Dependent Comparison of Biological Sequences

1984 • 92 citations

Use of long sequence alignments to study the evolution and regulation of mammalian globin gene clusters.

1993 • 90 citations

Dissection of the enhancer activity of beta-globin 5' DNase I-hypersensitive site 2 in transgenic mice.

1992 • 85 citations

The regulation of human globin gene switching

1993 • 62 citations

A local alignment tool for very long DNA sequences

1995 • 46 citations

Comparative analysis of the locus control region of the rabbit β-like globin gene cluster: HS3 increases transient expression of an embryonic ε-globin gene

1993 • 44 citations

Linear-space algorithms that build local alignments from fragments

1995 • 42 citations

Globin Gene Server: A Prototype E-Mail Database Server Featuring Extensive Multiple Alignments and Data Compilation for Electronic Genetic Analysis

1994 • 33 citations

Sequence comparison with concave weighting functions

1988 • 32 citations

Erythroid differentiation of mouse erythroleukemia cells results in reorganization of protein-DNA complexes in the mouse beta maj globin promoter but not its distal enhancer.

1993 • 32 citations

Locating well-conserved regions within a pairwise alignment

1993 • 31 citations

Positive and negative regulatory elements of the rabbit embryonic ϵ-globin gene revealed by an improved multiple alignment program and functional analysis

1993 • 26 citations

Parallelization of a local similarity algorithm

1992 • 26 citations

Constrained sequence alignment

1993 • 21 citations

Methods in enzymology: Volume 183 molecular evolution: Computer analysis of protein and nucleic acid sequences

1991 • 21 citations

A point of contact between computer science and molecular biology

1994 • 8 citations

Computing all suboptimal alignments in linear space

1994 • 7 citations

On the space complexity of some algorithms for sequence comparison

1992 • 5 citations