The use and analysis of microarray data

Gene Ontology: tool for the unification of biology

2000 • 38,297 citations

C4.5: Programs for Machine Learning

1992 • 24,077 citations

Cluster analysis and display of genome-wide expression patterns

1998 • 16,410 citations

Parallel Distributed Processing: Explorations in the Microstructure of Cognition: Foundations

1986 • 15,232 citations

Parallel Distributed Processing

1986 • 14,631 citations

Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring

1999 • 11,586 citations

In silico prediction of protein-protein interactions in human macrophages

2014 • 11,120 citations

Significance analysis of microarrays applied to the ionizing radiation response

2001 • 10,393 citations

Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling

2000 • 9,712 citations

Quantitative Monitoring of Gene Expression Patterns with a Complementary DNA Microarray

1995 • 9,575 citations

Comprehensive Identification of Cell Cycle–regulated Genes of the YeastSaccharomyces cerevisiaeby Microarray Hybridization

1998 • 4,811 citations

Serial Analysis of Gene Expression

1995 • 3,659 citations

Using Bayesian Networks to Analyze Expression Data

2000 • 3,320 citations

Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation

1999 • 2,990 citations

Expression monitoring by hybridization to high-density oligonucleotide arrays

1996 • 2,796 citations

Support vector machine classification and validation of cancer tissue samples using microarray expression data

2000 • 2,446 citations

Knowledge-based analysis of microarray gene expression data by using support vector machines

2000 • 2,328 citations

Systematic variation in gene expression patterns in human cancer cell lines

2000 • 2,119 citations

Metabolite profiling for plant functional genomics

2000 • 2,062 citations

Singular value decomposition for genome-wide expression data processing and modeling

2000 • 1,975 citations

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application

2001 • 972 citations

MUTUAL INFORMATION RELEVANCE NETWORKS: FUNCTIONAL GENOMIC CLUSTERING USING PAIRWISE ENTROPY MEASUREMENTS

1999 • 970 citations

Reveal, a general reverse engineering algorithm for inference of genetic network architectures.

1998 • 962 citations

PRINCIPAL COMPONENTS ANALYSIS TO SUMMARIZE MICROARRAY EXPERIMENTS: APPLICATION TO SPORULATION TIME SERIES

1999 • 764 citations

Tissue Classification with Gene Expression Profiles

2000 • 756 citations

Large-scale temporal gene expression mapping of central nervous system development

1998 • 647 citations

Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks

2000 • 623 citations

Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects

2001 • 584 citations

Analysis of gene expression data using self‐organizing maps

1999 • 558 citations

Quantitative analysis of mRNA amplification by in vitro transcription

2001 • 505 citations

Analysis of matched mRNA measurements from two different microarray technologies

2002 • 486 citations

Comparison of Methods for Image Analysis on cDNA Microarray Data

2002 • 465 citations

Global response of Saccharomyces cerevisiae to an alkylating agent

1999 • 426 citations

Analysis of strain and regional variation in gene expression in mouse brain

2001 • 295 citations

Microarray analysis of the transcriptional network controlled by the photoreceptor homeobox gene Crx

2000 • 271 citations

Profiling Expression Patterns and Isolating Differentially Expressed Genes by cDNA Microarray System with Colorimetry Detection

1998 • 226 citations

Direct Comparison of GeneChip and SAGE on the Quantitative Accuracy in Transcript Profiling Analysis

2000 • 211 citations

Statistical Analysis of Array Expression Data as Applied to the Problem of Tamoxifen Resistance

1999 • 207 citations

Analyzing high-density oligonucleotide gene expression array data

2000 • 198 citations

Microarrays for an Integrative Genomics

2002 • 178 citations

Genomic regulation modeled as a network with basins of attraction.

1998 • 134 citations

Analysing gene expression data from DNA microarrays to identify candidate genes

2001 • 124 citations

A NONPARAMETRIC SCORING ALGORITHM FOR IDENTIFYING INFORMATIVE GENES FROM MICROARRAY DATA

2000 • 121 citations

Centralization: a new method for the normalization of gene expression data

2001 • 117 citations

Identifying marker genes in transcription profiling data using a mixture of feature relevance experts

2001 • 104 citations

Modeling the normal and neoplastic cell cycle with "realistic Boolean genetic networks": their application for understanding carcinogenesis and assessing therapeutic strategies.

1998 • 88 citations

DETERMINING SIGNIFICANT FOLD DIFFERENCES IN GENE EXPRESSION ANALYSIS

2000 • 80 citations

Sources of nonlinearity in cDNA microarray expression measurements

2001 • 75 citations

Reproducibility of Alternative Probe Synthesis Approaches for Gene Expression Profiling with Arrays

2000 • 53 citations

Normalization of array hybridization experiments in differential gene expression analysis

1999 • 49 citations

Normalization of array hybridization experiments in differential gene expression analysis

1999 • 43 citations