ITTACA: a new database for integrated tumor transcriptome array and clinical data analysis

Bioconductor: open software development for computational biology and bioinformatics.

2004 • 11,755 citations

In silico prediction of protein-protein interactions in human macrophages

2014 • 11,120 citations

Gene expression profiling predicts clinical outcome of breast cancer

2002 • 9,314 citations

Repeated observation of breast tumor subtypes in independent gene expression data sets

2003 • 5,356 citations

Minimum information about a microarray experiment (MIAME)—toward standards for microarray data

2001 • 4,058 citations

ONCOMINE: A Cancer Microarray Database and Integrated Data-Mining Platform

2004 • 3,585 citations

Breast cancer classification and prognosis based on gene expression profiles from a population-based study

2003 • 2,013 citations

Predicting the clinical status of human breast cancer by using gene expression profiles

2001 • 1,336 citations

NCBI GEO: mining millions of expression profiles--database and tools

2004 • 1,138 citations

ArrayExpress--a public repository for microarray gene expression data at the EBI

2004 • 1,104 citations

Gene Expression Profiling in Uveal Melanoma Reveals Two Molecular Classes and Predicts Metastatic Death

2004 • 703 citations

Estrogen receptor status in breast cancer is associated with remarkably distinct gene expression patterns.

2001 • 672 citations

Gene expression predictors of breast cancer outcomes

2003 • 631 citations

NetAffx: Affymetrix probesets and annotations

2003 • 492 citations

Identifying distinct classes of bladder carcinoma using microarrays

2002 • 487 citations

Tumor classification based on gene expression profiling shows that uveal melanomas with and without monosomy 3 represent two distinct entities.

2003 • 317 citations

The Stanford Microarray Database accommodates additional microarray platforms and data formats

2004 • 201 citations

Molecular classification of familial non- BRCA1/BRCA2 breast cancer

2003 • 183 citations

MatchMiner: a tool for batch navigation among gene and gene product identifiers

2003 • 169 citations

Submission of Microarray Data to Public Repositories

2004 • 123 citations

Recent additions and improvements to the Onto-Tools

2005 • 117 citations

Identifying Superficial, Muscle-Invasive, and Metastasizing Transitional Cell Carcinoma of the Bladder

2004 • 107 citations