Discovering patterns to extract protein-protein interactions from full biomedical texts

A general method applicable to the search for similarities in the amino acid sequence of two proteins

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Identification of common molecular subsequences

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The Database of Interacting Proteins: 2004 update

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DIP: the Database of Interacting Proteins

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GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles

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[57] Genetic and physical maps of Saccharomyces cerevisiae

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Automated extraction of information on protein–protein interactions from the biological literature

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Accomplishments and challenges in literature data mining for biology

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High-quality protein knowledge resource: SWISS-PROT and TrEMBL

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Mining literature for protein–protein interactions

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Automatic Extraction of Protein Interactions from Scientific Abstracts

1999 • 258 citations

EVENT EXTRACTION FROM BIOMEDICAL PAPERS USING A FULL PARSER

2000 • 228 citations

Robust Relational Parsing over Biomedical Literature: Extracting Inhibit Relation

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Genetic and physical maps of Saccharomyces cerevisiae

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BIDIRECTIONAL INCREMENTAL PARSING FOR AUTOMATIC PATHWAY IDENTIFICATION WITH COMBINATORY CATEGORIAL GRAMMAR

2000 • 149 citations

Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts.

1999 • 140 citations

FILLING PREPOSITION-BASED TEMPLATES TO CAPTURE INFORMATION FROM MEDICAL ABSTRACTS

2001 • 68 citations

PathwayFinder: paving the way towards automatic pathway extraction

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A new method for automatic pattern acquisition to extract information from biomedical texts

2005 • 1 citations