Influence of the Dynamic Positions of Cations on the Structure of the DNA Minor Groove: Sequence-Dependent Effects

Comparison of simple potential functions for simulating liquid water

1983 • 37,746 citations

Particle mesh Ewald: An N⋅log(N) method for Ewald sums in large systems

1993 • 26,634 citations

Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

1977 • 19,896 citations

A Second Generation Force Field for the Simulation of Proteins, Nucleic Acids, and Organic Molecules

1995 • 12,826 citations

Optimised parameters for A-DNA and B-DNA

1972 • 971 citations

A Modified Version of the Cornellet al.Force Field with Improved Sugar Pucker Phases and Helical Repeat

1999 • 918 citations

The Definition of Generalized Helicoidal Parameters and of Axis Curvature for Irregular Nucleic Acids

1988 • 895 citations

Crystal structure analysis of a complete turn of B-DNA

1980 • 844 citations

Defining the Structure of Irregular Nucleic Acids: Conventions and Principles

1989 • 704 citations

Base sequence and helix structure variation in B and A DNA

1983 • 522 citations

RNA double-helical fragments at atomic resolution: I. The crystal and molecular structure of sodium adenylyl-3′,5′-uridine hexahydrate

1976 • 361 citations

A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation

1997 • 292 citations

The electrostatic potential of B‐DNA

1989 • 263 citations

Molecular Dynamics Simulations Highlight the Structural Differences among DNA:DNA, RNA:RNA, and DNA:RNA Hybrid Duplexes

1997 • 258 citations

Water and ion binding around RNA and DNA (C,G) oligomers11Edited by I. Tinoco

2000 • 251 citations

Structure of an alternating-B DNA helix and its relationship to A-tract DNA.

1988 • 239 citations

Sodium and Chlorine Ions as Part of the DNA Solvation Shell

1999 • 218 citations

Nucleic acids: theory and computer simulation, Y2K

2000 • 205 citations

The NMR Structure of a DNA Dodecamer in an Aqueous Dilute Liquid Crystalline Phase

2000 • 202 citations

DNA structure: cations in charge?

1999 • 195 citations

Sequence-specific binding of counterions toB-DNA

2000 • 171 citations

Electrostatic Mechanisms of DNA Deformation

2000 • 168 citations

DNA Structure: What's in Charge?

2000 • 164 citations

Crystal structure of CATGGCCATG and its implications for A-tract bending models.

1993 • 145 citations

Cations Mediate B-DNA Conformational Heterogeneity

2000 • 128 citations

Flexible Structure of DNA: Ion Dependence of Minor-Groove Structure and Dynamics

2000 • 120 citations

Water and ion binding around r(UpA)12and d(TpA)12Oligomers - comparison with RNA and DNA (CpG)12 duplexes

2001 • 114 citations

Molecular dynamics simulation study of DNA dodecamer d(CGCGAATTCGCG) in solution: conformation and hydration

1997 • 103 citations

The Dependence of the Surface Electrostatic Potential of B-DNA on Environmental Factors

1985 • 102 citations

C-C-A-G-G-C-m5C-T-G-G. Helical fine structure, hydration, and comparison with C-C-A-G-G-C-C-T-G-G.

1992 • 91 citations

Molecular Dynamics Simulations of DNA in Solution with Different Counter-ions

1998 • 84 citations

Effective potentials for ion–DNA interactions

1999 • 83 citations

Theoretical studies of an exceptionally stable RNA tetraloop: observation of convergence from an incorrect NMR structure to the correct one using unrestrained molecular dynamics

1997 • 73 citations

Z‐DNA and other non‐B‐DNA structures are reversed to B‐DNA by interaction with netropsin

1983 • 50 citations

The formation of A-DNA in NaDNA films is suppressed by netropsin

1992 • 13 citations