Modeling and Studying Proteins with Molecular Dynamics

The Protein Data Bank

2000 • 35,287 citations

<scp>CHARMM</scp>: A program for macromolecular energy, minimization, and dynamics calculations

1983 • 14,615 citations

All-Atom Empirical Potential for Molecular Modeling and Dynamics Studies of Proteins

1998 • 13,827 citations

AMBER, a package of computer programs for applying molecular mechanics, normal mode analysis, molecular dynamics and free energy calculations to simulate the structural and energetic properties of molecules

1995 • 3,001 citations

Encyclopedia of Computational Chemistry

1998 • 2,752 citations

NAMD2: Greater Scalability for Parallel Molecular Dynamics

1999 • 2,396 citations

The GROMOS Biomolecular Simulation Program Package

1999 • 1,436 citations

Structural Basis for Ligand-Regulated Oligomerization of AraC

1997 • 215 citations