How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results

Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2−ΔΔCT Method

2001 • 156,143 citations

Biometry: The Principles and Practice of Statistics in Biological Research

1969 • 21,227 citations

Exploration, normalization, and summaries of high density oligonucleotide array probe level data

2003 • 10,537 citations

Biometry. The Principles and Practice of Statistics in Biological Research

1970 • 9,036 citations

A comparison of normalization methods for high density oligonucleotide array data based on variance and bias

2003 • 8,139 citations

Summaries of Affymetrix GeneChip probe level data

2003 • 4,927 citations

Biometry: The Principles and Practice of Statistics in Biological Research (2nd ed.).

1982 • 3,776 citations

Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data

2003 • 3,646 citations

Model-based analysis of oligonucleotide arrays: Expression index computation and outlier detection

2000 • 3,126 citations

Expression monitoring by hybridization to high-density oligonucleotide arrays

1996 • 2,796 citations

High density synthetic oligonucleotide arrays

1999 • 2,256 citations

Large-Scale Identification, Mapping, and Genotyping of Single-Nucleotide Polymorphisms in the Human Genome

1998 • 2,163 citations

CTR1, a negative regulator of the ethylene response pathway in arabidopsis, encodes a member of the Raf family of protein kinases

1993 • 1,894 citations

Accessing Genetic Information with High-Density DNA Arrays

1996 • 1,511 citations

Growth Stage–Based Phenotypic Analysis of Arabidopsis

2001 • 1,276 citations

Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application

2001 • 972 citations

Growth Stage-Based Phenotypic Analysis of Arabidopsis: A Model for High Throughput Functional Genomics in Plants

2001 • 716 citations

An Ethylene-Inducible Component of Signal Transduction Encoded by Never-ripe

1995 • 633 citations

Real‐time RT‐PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root‐ and shoot‐specific genes

2004 • 622 citations

EIN4 and ERS2 Are Members of the Putative Ethylene Receptor Gene Family in Arabidopsis

1998 • 574 citations

Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset

2005 • 357 citations

A model of molecular interactions on short oligonucleotide microarrays

2003 • 325 citations

A benchmark for Affymetrix GeneChip expression measures

2004 • 292 citations

Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data

2001 • 282 citations

Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays

2003 • 162 citations

Ethylene-Induced Differential Growth of Petioles in Arabidopsis. Analyzing Natural Variation, Response Kinetics, and Regulation

2005 • 141 citations

LeCTR1, a Tomato CTR1-Like Gene, Demonstrates Ethylene Signaling Ability in Arabidopsis and Novel Expression Patterns in Tomato

2002 • 138 citations

1-Aminocyclopropane-1-Carboxylate Oxidase Activity Limits Ethylene Biosynthesis in Rumex palustrisduring Submergence

1999 • 134 citations

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays

2004 • 125 citations

DNA hybridization to mismatched templates: A chip study

2002 • 122 citations

Growth responses of Rumex species in relation to submergence and ethylene

1989 • 118 citations

A homolog of the Arabidopsis thaliana ERS gene is actively regulated in Rumex palustris upon flooding

1997 • 96 citations

Benchmarking the CATMA Microarray. A Novel Tool forArabidopsis Transcriptome Analysis

2005 • 96 citations

Comparative analysis of algorithms for signal quantitation from oligonucleotide microarrays

2004 • 94 citations

Empirical characterization of the expression ratio noise structure in high-density oligonucleotide arrays

2002 • 89 citations

Match-Only Integral Distribution (MOID) Algorithm for high-density oligonucleotide array analysis

2002 • 73 citations

Guidelines for incorporating non-perfectly matched oligonucleotides into target-specific hybridization probes for a DNA microarray

2004 • 60 citations

Asymmetric Responsiveness to Ethylene Mediates Cell Elongation in the Apical Hook of Peas

1998 • 53 citations